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  MRC DiMeN Doctoral Training Partnership: Imbalance between cell biomass production and envelope biosynthesis underpins the bactericidal activity of cell wall -targeting antibiotics


   MRC DiMeN Doctoral Training Partnership

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  Dr H Strahl von Schulten, Dr R Corrigan  No more applications being accepted  Competition Funded PhD Project (Students Worldwide)

About the Project

The majority of our clinically most successful antibiotics target surprisingly few cellular processes. The prominent first-line antibiotic-classes penicillins and cephalosporins, but also the last resort antibiotics vancomycin and daptomycin that are used to treat life-threatening multidrug resistant infections, target the bacterial cell wall synthesis machinery. Despite extensive research, how cell wall -targeting antibiotics kill bacteria and why they are clinically so exceptionally successful has remained enigmatic.

The textbook explanation for the bactericidal activity of cell wall -targeting antibiotic is induced cell lysis. However, this ignores the fact that bacteria can die faster than they lyse, and that lysis is frequently not required for efficient killing. Recently, we made the striking discovery that wall-targeting antibiotics trigger a cascade of cellular disturbances that are independent of the induced cell lysis process. Hence, to understand how this prominent class of antibiotics unfolds its antibacterial properties, the cellular processes leading to the lysis-independent killing now needs to be studied in detail.

Studying such processes for known antibiotics is important to truly understand how widely used antibiotic classes work, but also to decipher why they share a comparatively low rate of antimicrobial resistance (AMR) development, a property that is key for their clinically success. Crucially, studying these processes will allow us to guide the development of the next generation of new antibiotics towards cellular targets with intrinsically lower risk of resistance development.

In this closely collaborative project between the groups of Henrik Strahl (Centre for Bacterial Cell Biology, Newcastle University) and Rebecca Corrigan (School of Biosciences, University of Sheffield), the newly discovered mode of action of cell targeting antibiotics will be analysed in Gram-positive and -negative model organisms Staphylococcus aureus and Escherichia coli, respectively. The research programme makes extensive use of advanced microscopy techniques such as microfluidic devises, super resolution microscopy and high-speed imaging, combined with bacterial genetics, growth dynamics, and antibiotic resistance and stress profiling. You will, thus, enjoy an exceptionally broad training in state-of-the-art methods in molecular and cellular microbiology, and in antibiotics and AMR research, in a friendly and welcoming environment.

Interested applicants are strongly encouraged to contact the supervisors prior to application.

Henrik Strahl

Web: www.ncl.ac.uk/cbcb/staff/profile/hstrahl.html

E-mail: [Email Address Removed]

Twitter: @HenrikStrahl

Rebecca Corrigan

Web: www.sheffield.ac.uk/biosciences/people/academic-staff/rebecca-corrigan

E-mail: [Email Address Removed]

Twitter: @corrigar1

Benefits of being in the DiMeN DTP:

This project is part of the Discovery Medicine North Doctoral Training Partnership (DiMeN DTP), a diverse community of PhD students across the North of England researching the major health problems facing the world today. Our partner institutions (Universities of Leeds, Liverpool, Newcastle, York and Sheffield) are internationally recognised as centres of research excellence and can offer you access to state-of the-art facilities to deliver high impact research.

We are very proud of our student-centred ethos and committed to supporting you throughout your PhD. As part of the DTP, we offer bespoke training in key skills sought after in early career researchers, as well as opportunities to broaden your career horizons in a range of non-academic sectors.

Being funded by the MRC means you can access additional funding for research placements, international training opportunities or internships in science policy, science communication and beyond. See how our current DiMeN students have benefited from this funding here: https://www.dimen.org.uk/blog

Further information on the programme and how to apply can be found on our website:

https://www.dimen.org.uk/how-to-apply

Biological Sciences (4)

Funding Notes

Studentships are fully funded by the Medical Research Council (MRC) for 4yrs. Funding will cover tuition fees, stipend and project costs. We also aim to support the most outstanding applicants from outside the UK and are able to offer a limited number of full studentships to international applicants. Please read additional guidance here: https://www.dimen.org.uk/eligibility-criteria
Studentships commence: 1st October 2023
Good luck!

References

References:
Buttress et al (2022) A guide for membrane potential measurements in Gram-negative bacteria using voltage-sensitive dyes. Microbiology 168(9).
(https://www.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.001227)
Bennison et al (2021) The stringent response inhibits 70S ribosome formation in Staphylococcus aureus by impeding GTPase-ribosome interactions. mBio 12, e0267921.
(https://journals.asm.org/doi/10.1128/mBio.02679-21)
Wood A et al (2019) The (p)ppGpp-binding GTPase Era promotes rRNA processing and cold adaptation in Staphylococcus aureus. PLoS Genetics 15, e1008346.
(https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008346)
Scheinpflug et al (2017) Antimicrobial peptide cWFW kills by combining lipid phase separation with autolysis. Scientific Reports 7, 44332.
(https://www.nature.com/articles/srep44332)
Müller et al (2016) Daptomycin inhibits cell envelope synthesis by interfering with fluid membrane microdomains. PNAS 113, E7077-E7086.
(https://www.pnas.org/content/113/45/E7077.long)
Corrigan RM et al (2016) ppGpp negatively impacts ribosome assembly affecting growth and antimicrobial tolerance in Gram-positive bacteria. PNAS 113, E1710-9.
(https://www.pnas.org/doi/abs/10.1073/pnas.1522179113)